pafA



Type
protein_coding
Name
pafA
Locus Name

Rv2097c

Product

Proteasome accessory factor a PafA

Functional Category

Intermediary metabolism and respiration

Location
2355319..2356677 (- strand)
Gene Length
1358 bp
Nucleotides
GTGCAGCGTCGAATCATGGGCATCGAAACCGAGTTCGGTGTCACCTGCACATTTCACGGTCACCGTCGGCTGTCCCCGGACGAGGTGGCCCGCTACCTGTTTCGCCGTGTGGTGTCCTGGGGCCGCAGCTCCAACGTCTTCCTGCGTAACGGTGCGCGCCTGTATCTCGACGTGGGCAGTCATCCCGAGTACGCCACCGCCGAATGCGACAGCCTGGTGCAGCTGGTCACCCATGACCGGGCCGGTGAATGGGTGCTGGAAGACCTGCTCGTTGACGCCGAGCAGCGGCTGGCCGACGAGGGCATCGGCGGCGACATCTACCTGTTCAAGAACAACACCGATTCGGCGGGCAACTCCTACGGCTGCCACGAAAACTACCTGATCGTGCGGGCCGGTGAGTTCTCCCGGATCTCCGACGTGCTGCTGCCCTTCCTGGTCACCCGCCAGCTGATCTGCGGGGCCGGCAAGGTGCTGCAGACCCCCAAGGCCGCCACCTACTGCTTAAGCCAACGCGCCGAACACATTTGGGAGGGCGTCTCTAGCGCCACGACCCGATCCCGCCCCATTATCAACACCCGCGACGAGCCACATGCCGACGCCGAGAAGTACCGGCGGCTGCACGTCATCGTCGGCGACTCCAACATGTCCGAGACCACCACCATGCTCAAGGTGGGCACCGCGGCGCTCGTGCTGGAAATGATCGAAAGTGGAGTCGCCTTCCGTGATTTTTCCCTGGATAACCCGATCCGCGCCATCCGTGAGGTTAGCCATGATGTCACCGGTCGCCGGCCGGTGCGGTTGGCCGGAGGCCGTCAGGCCAGCGCGCTGGACATCCAGCGGGAGTACTACACCCGCGCAGTCGAGCACTTGCAGACTCGGGAGCCCAACGCGCAGATCGAGCAGGTCGTCGACCTGTGGGGCCGCCAACTCGATGCCGTCGAAAGCCAGGATTTCGCCAAGGTCGACACCGAAATCGACTGGGTGATCAAACGCAAGCTGTTTCAGCGTTATCAGGACCGCTATGACATGGAGTTGTCCCACCCGAAGATCGCTCAGCTGGATCTGGCCTACCACGACATCAAGCGCGGACGCGGGATCTTTGATCTCCTGCAGCGCAAAGGGTTGGCCGCGCGCGTCACCACCGACGAAGAAATCGCGGAGGCCGTCGATCAGCCCCCACAGACCACCCGGGCCCGGCTGCGCGGTGAGTTCATCAGCGCCGCGCAGGAGGCGGGACGTGATTTCACCGTCGACTGGGTACATCTCAAACTCAACGACCAGGCGCAGCGCACCGTGCTGTGCAAAGACCCGTTCCGGGCGGTCGATGAGCGGGTTAAGCGGCTGATCGCGAGCATGTA
Drug Resistance

Check for drug resistance association at TBDREAMDB

Mutations

Check for mutants available at TARGET


Function
Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side-chain amino group of a substrate lysine. PafA is required to confer resistance against the lethal effects of reactive nitrogen intermediates (RNI), antimicrobial molecules produced by activated macrophages and other cell types. {ECO:0000269|PubMed:14671303, ECO:0000269|PubMed:17082771, ECO:0000269|PubMed:19448618, ECO:0000269|PubMed:20355727}.
Family

Pup ligase/Pup deamidase family, Pup-conjugating enzyme subfamily

GO
InterPro

UniProt
P9WNU7
GenBank
Rv2097c
EnsemblBacteria
Rv2097c
Mycobrowser
Rv2097c


Summary
Name
Pup--protein ligase (EC 6.3.1.19) (Proteasome accessory factor A) (Pup-conjugating enzyme)
Family
Pup ligase/Pup deamidase family, Pup-conjugating enzyme subfamily
Protein Sequence
MQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVSSATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAFRDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIEQVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDIKRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWVHLKLNDQAQRTVLCKDPFRAVDERVKRLIASM
Mass
51,384 Da
Length
452 Aa

Rv2097c doesn't seem to be a targeted by any drug.


Rv2097c doesn't seem to be involved in any pathway.


Proteogenomic analysis of Mycobacterium tuberculosis by high resolution mass spectrometry.
Mol Cell Proteomics. 2011 Dec;10(12):M111.011627. doi: 10.1074/mcp.M111.011445. Epub 2011 Oct 3.
Molecular analysis of the prokaryotic ubiquitin-like protein (Pup) conjugation pathway in Mycobacterium tuberculosis.
Mol Microbiol. 2010 Sep;77(5):1123-35. doi: 10.1111/j.1365-2958.2010.07276.x.
Prokaryotic ubiquitin-like protein (Pup) is coupled to substrates via the side chain of its C-terminal glutamate.
J Am Chem Soc. 2010 Apr 28;132(16):5610-2. doi: 10.1021/ja910546x.
Bacterial ubiquitin-like modifier Pup is deamidated and conjugated to substrates by distinct but homologous enzymes.
Nat Struct Mol Biol. 2009 Jun;16(6):647-51. doi: 10.1038/nsmb.1597. Epub 2009 May 17.
Ubiquitin-like protein involved in the proteasome pathway of Mycobacterium tuberculosis.
Science. 2008 Nov 14;322(5904):1104-7. doi: 10.1126/science.1163885. Epub 2008 Oct 2.
Identification of substrates of the Mycobacterium tuberculosis proteasome.
EMBO J. 2006 Nov 15;25(22):5423-32. doi: 10.1038/sj.emboj.7601405. Epub 2006 Nov 2.
Characterization of the proteasome accessory factor (paf) operon in Mycobacterium tuberculosis.
J Bacteriol. 2007 Apr;189(8):3044-50. doi: 10.1128/JB.01597-06. Epub 2007 Feb 2.
Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence.
Nature. 1998 Jun 11;393(6685):537-44. doi: 10.1038/31159.
The proteasome of Mycobacterium tuberculosis is required for resistance to nitric oxide.
Science. 2003 Dec 12;302(5652):1963-6. doi: 10.1126/science.1091176.